I made one more trial run using Handbrake. I had found a checkbox for determining quality of the video by resulting size. A bit of an inversion of how I was thinking about it, but it worked. Requesting a size of 48MB and giving it permission to make two passes instead of just one, I ran one more compression.
Handbrake performed marvelously. The quality of the MP4 video produced by Handbrake is much better than the FLV produced by Super.
Download the MP4. Enjoy.